Results for "Computational Biology works and writings"
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...e genomes is more challenging and often draft genomes are fragm...rk in our lab has focussed on computational approaches to speed...ed the use of optical mapping and mate-pair data to augment ass...nes) with surprisingly little computational and experimental ef...multiple maps, contig graphs and scaf...2551 days ago
- https://ocw.mit.edu/courses/biology/7-91j-foundations-of-computational-and-systems-biology-spring-2014/lecture-slides/MIT7_91JS14_Lecture6.pdf
2501 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of it...2493 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornersto...ed the field of bioinformatics, and i...rrently implemented in all free and commercial bioinformatics pac...ral applicability of BLAST with computational efficiency, accessibility, and user experience, so that NGS...ficiently even when only modest computat...2486 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches that play a crit...ole in the emerging new branch of biolo...rovides the reader with an understanding of the principles and approaches of functional geno...the potential and limitations of computat...2474 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly pro...long reads to optimally order and orient contigs assembled from sho...ures for the assembly of large and c...performance guarantees. Genome Biology, May 2016, doi: 10.1186/s...ired-end sequences. Journal of Computational Biology,...2361 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for...udents to be grounded in theory and leave the course empowered to... We will study the leading computational and quantitative approaches for c...se will focus on human genomics and human medical applications, b...tion, personal genome analysis, and canc...2359 days ago
- Computational Biology is a huge field of study, th...upon many distinct algorithmic and biological areas of study. Wh...ence alignment (global, local, and glocal alignment &mdash w...es for efficient text indexing and exact search Heuri...ogenetics &mdash The small and larg...
2359 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML pro...as taxonomic information, gene names and identifiers, branch lengths,...rability between various applications and data...2359 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposabl...a pipeline designed to find, annotate and quantify Transposable Element...e it does not require genome assembly and works on small datasets (< 1X)...output examples of quantification and TE l...2355 days ago
