pWhatsHap: a parallel, high-performance version of WhatsHap
Given the potential relevance of efficient haplotyping in several analysis pipelines, we...bsp;pWhatsHap is embedded in a toolkit developed in Python and supports genomics datasets in standard file for...2013 days ago
Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.com/biotite-dev/bi...especially for the beginners in programming and computationally efficient because of the im...sp;Biotite package bundles popular tasks in computat...1979 days ago
GenoViz: Visualization software for genomics
GenoViz provides software applications and re-usable components for data visualization and data sharing in genomics. Our flagship product is Inte...1964 days ago
1945 days ago
Roary: the Pan Genome Pipeline
...t can analyse datasets with thousands of samples, something which is computationally infeasible with existing me...take weeks and hundreds of GB of RAM. Roary is not intended for meta-genomics or for comparing extremely di...1944 days ago
iRNAD: a computational tool for identifying D modification sites in RNA sequence
iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the classification. http://lin-group.cn/server/iRNAD/1830 days ago
MGERT: Mobile Genetic Elements Retrieving Tool
MGERT is a computational pipeline for easy retrieving of MGE's coding sequences of a particular family from genome assemblies. MGERT utilizes several established bioinformatic tools combined into single pipeline which hides different technical quirks from an inexperienced user.1828 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
The pipeline is open-source and hosted in a public Bitbucket repository. TRITE...n Himmelbach et al. 2018. Refer to the technical notes of 10X Genomics on how to generate Chromium d...1734 days ago
Apollo: a sequence annotation editor
The well-established inaccuracy of purely computational methods for annotating genome sequences necessitates an interactive tool to allow biological experts to refine these ap...1727 days ago
Seq: A high-performance, Pythonic language for bioinformatics
Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible syntax an...fic features and optimizations, Seq makes writing high-performance genomics software as easy as writing P...1639 days ago