GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://...nbsp; Transcriptome mapping through internal construction of a transcript...lopment of a new spliced-alignment mode for mapping RNA-seq...2539 days ago
2520 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to a...high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Gener...nalysis of ChIP-seq and RNA-seq data in one place, p...and data from GeneProf may be used externally...2510 days ago
2506 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but s...2498 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid seq...es the accuracy and general applicability of BLAST with com...data can be analyzed efficiently even when only modest computa...2491 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role in the emerging new branch of bio...mics and of the potential and limitations of computational and experimental approa...2479 days ago
Opera: An optimal genome scaffolding program
...eat-rich eukaryotic genomes with performance guarantees. Genome Biology, May 2016, doi: 10.1186/s13059-016-...genomic scaffolds with high-throughput paired-end sequences. Journal of Computational Biology, Sept. 2011, doi:10.1089/cmb....2366 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave the course empowered to conduct independent genomic analyses. We will study the leading computa...2364 days ago
2364 days ago