Results for "Computational RNA Biology"
Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
...nt tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualiz...using integration of DNA and RNA seq data-- boosts sensitivity...s machine learning model with biology and statistics to predict...genomes (plus many other external sites); Only GRCh27 coordinates...2913 days ago
Worldwide funding agencies to fund your bioinformatics research !!
...us) endowments. Whitaker International Program: Biomedica...to open themselves up to international institutions and applic...patient care specialty. International OCD Foundation: The IO...al models, gene therapy, neurobiology and development of the basal...2942 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In...ES - Non-functional copies of RNA genes which have been reinteg...NA (deoxyribonucleic acid) or RNA (ribonucleic acid) strand tha...direction of transcription by RNA polymerase, DNA strands have...AAGC. The European Molecular Biology Open Software Suite (EMBOSS)...2215 days ago
- alignment: the mapping of a raw sequence read to a location within a ref...quencing, both ends of a single DNA or RNA fragment are sequenced, but t...ess where both ends of a single DNA or RNA fragment are sequenced, but t...process where only one end of a DNA or RNA fra...
2873 days ago
Genome Assembly Tools and Software - PART1 !!
...our assembly. For the sake of computational memory saving and convenience...o Transcriptome Assembly from RNA-seq Data BinPacker is a novel de nov...mic datasets has proven to be computationally challenging. We present a n...tome assembler that assembles RNA-seq reads into transcripts. SSP a...2689 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two...e transcriptase, from a Messenger RNA template ( Messenger RNA contains the coded informatio...best. phylogenetics -- Field of biology that deals with the relations...d. systematics -- Field of biology that deals with the diversity...2466 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignmen...pression of transcripts using RNA-seq data (uses k-mers)...e k-mers profiles of the RNA-seq paired-end reads Softwar...tware (Python) http://jordan.biology.gatech.edu/page/software/stri...2375 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good opt...is required for metagenomic sample data --rna this flag is required for RNA-Seq data --plasmid...[default: 250] --tmp-dir <dirname&g...
2355 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and...he useful links: Single Cell RNAseq data analysis Tutorial A...level analysis of single-cell RNA-seq data A step-by-step work...com/nghiavtr/BPSC Sincera: A Computational Pipeline for Single...models applied to single-cell RNA-seq...2354 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no sing...s. We review all of the major steps in RNA-seq data analysis, including...ion, differential gene expression, alternative splicing, functional anal...ene-level exploratory analysis and DE RNAseq...
2354 days ago
