2553 days ago
AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designe...ve comparison of AVID with other popular alignment tools. To this end, we have establi...d methods should be useful for future studies. The tools we have developed for the ali...2550 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries bas...a. These simulated datasets can be used to test the accuracy of bioinformatic tools under specific hypothesis, e....2549 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and...perform comparative genomics studies by compensating limitations of existing tools. Synteny Portal is freely ava...2549 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
BEDOPS v2.4.26 is a suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims...2530 days ago
2513 days ago
DIYA: a bacterial annotation pipeline for any genomics lab
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV http://gmod.org/wiki/Diya2512 days ago
2502 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full l...ffling) in any of the species. It combines refine and tba tools to align either "draft" or "f...2492 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-a...accuracy and general applicability of BLAST with computational efficiency, accessibility, an...an be analyzed efficiently even when only modest compu...2488 days ago