Results for "Computational Tools"
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Spines Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data structures for efficient data...3002 days ago
- NCBI Remap. This tool is conceptually similar to liftOver in that in manages c...API for NCBI Remap. More at http://www.ncbi.nlm.nih.gov/genome/tools/remap API http://www.ncbi.nlm.nih.gov/genome/tools/remap/docs/api...
3000 days ago
- HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides...ore easily be integrated into existing workflows or combined with alternative tools. More at http://bmcbioinform...
2999 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalone c...which are freely available for all uses: - kent/src/utils (includes big* tools) - kent/src/lib - k...2993 days ago
- Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More at http://scikit-learn.org/stable/index.html
2982 days ago
- GA4GH Data Working Group Led by David Haussler (UCSC) and Richard Durbin (Sanger Institute...nstitutes and Centers with IT industry leaders to create global standards and tools for the secure, privacy respe...
2961 days ago
- Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-specs...
2922 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end re...in order to score each base of the assembly. http://www.sanger.ac.uk/science/tools/reapr2945 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools such as HOMER. Setting up...2925 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain...cal pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLA...2919 days ago
