Results for "Computational Tools"
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage ALF A Simulation Framework for Genome Evolution http://www.cbrg.ethz.ch/alfBayesian Serial SimC...3736 days ago
List of In-silico Binding Site Prediction Tools
...g Site Prediction in Proteins tools CASTp : http://sts.bioengr.uic.edu/c...cture-based drug design. Many computational methods for the prediction of...acho Lab in the Department of Computational and System Biology at the Uni...cs and outperformed the other tools. We introduce a descriptor th...3743 days ago
Linux for bioinformatician !!!
..., provides several powerful admin tools and utilities which will help you to...ow what these no so user-friendly tools are and how to use them, you...and system admin as well as basic tools, which will help you to becom...an effective bioinformatician and computational biologist. For knowl...3704 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinfo...eral "standardized" file formats (FASTQ, SAM, VCF, etc.) and some tools for manipulating them (fastx toolkit, samtools, vcftools, etc.), there are s...3627 days ago
Next generation sequencing in R or bioconductor environment
...GenomicRanges, ShortRead, Rsamtools, etc. Documentation Geno...ages including ShortRead, Rsamtools, rtracklayer, GenomicFeatures...ina reads. Documentation Rsamtools Rsamtools provides functions...t data in BAM format (via Rsamtools) and associating them with ge...3623 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - d...entre. Features extensive supporting tools for DIP/SNP detection, etc. C...orithm. Features a number of support tools. Support for Roche FLX, Illum...lable. RSAT - RSAT: RNA-Seq Analysis Tools. RNASAT is developed and main...3517 days ago
- Since few years miRNA has shown to play important role in therap...nscription levels. Here are some important DBs and tools related with miRNA: miRNA Sequencing data analysis : http://tools.genxpro.net/omiras/ miRNApat...
3494 days ago
Apps for Busy Bioinformatics Researchers !!!
...iles - ab1. It includes handy tools such as "Reverse Complement", "Jump t...other zip apps, and also web-tools like Blast, this app allows you to an...iles - ab1. It includes handy tools such as "Reverse Complement",...effects, with predictions of computationally annotated functiona...3540 days ago
- Pathway Analysis is usually performed with aim to enrich the gen...cripts, and their gene products. However, existing tools and dbs mainly based on knowl...c/Pathways_2014_Module2.pdf Impotant Database and Tools: GeneMANIA, Cytoscape, ...
3494 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench -...entre. Features extensive supporting tools for DIP/SNP detection, etc. C...orithm. Features a number of support tools. Support for Roche FLX, Illum...ble. * RSAT - RSAT: RNA-Seq Analysis Tools. RNASAT is developed and main...3241 days ago
