2588 days ago
2587 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those intervals from their observed...nomes are currently sequenced to high precision, our theoretical analyses and computer...2543 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with O...equencing. The pipeline can run on a computing cluster as well as on a laptop computer...2538 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to analyse data produ...ed interface:Access your data at any time from any computer with a working internet conne...Data..'). Extensibility:Algorithm developers and computer...2494 days ago
2490 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associat...of phyloXML is described by XML Schema Definition (XSD) language....2348 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool p...takes full advantage of recent multi-core personal computers without requiring any additi...small RAM footprint, Ready to be used on desktop computer...2346 days ago
mojolicious: a next generation web framework for the Perl programming language.
Back in the early days of the web, many people learned Perl because of a wonderful Per... CGI. It was simple enough to get started without knowing much about the language and powerful enough to keep y...2303 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short starting DNA fragment, often a EST or partial gene segment, as "primer", to recursively blas...2154 days ago