2911 days ago
COSINE: non-seeding method for mapping long noisy sequences
Third generation sequencing (TGS) are highly promising technologies but the long and noisy reads from TGS are difficult to align using existing algorithms. Here, we present COSINE, a conceptually new method designed specifically for aligning long reads contaminated by a high level of errors.2012 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...a special "ambiguous" file for each of them. Paired reads will always be kept together.For example, if you had a library of something that was contaminated with e.coli and salmonella, y...2308 days ago
Ebola virus disease (EVD)or Ebola haemorrhagic fever !!!
...gh direct contact with blood, organs or other body fluids of infected people or exposure to objects such as needles and syringes that have been contaminated with infected secretions.Ebol...3550 days ago
Cleaner BLAST Databases for More Accurate Results
Do you use BLAST to identify a sequence or the evolutionary scope of a gene? That can be challenging if contaminated and misclassified sequences are in the BLAST databases and...6 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exact repeat somewhere, reads mapping to it will be mapped ambiguously. But if you want to determi...Tags: BBSplit, Read, Binning, Tool, Metagenomes, Contaminated, Libraries
2308 days ago
2793 days ago