Results for "Contiguity"
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...tered into GAEMR’s analysis pipeline, hence enabling the generation of standard reports. GAEMR’s analysis philosophy is centered on contiguity, correctness, and completenes...2889 days ago
- ...capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. Minia produces results of similar contiguity and accuracy to other de Brui...
2712 days ago
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Genome Assembly Tools and Software - PART2 !!
...d Reportin) is a complete genome analysis package that helps you evaluate and report on a genome assembly’s completeness, correctness, and contiguity. PyroCleaner 1.3 – Cle...2693 days ago
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Genome Assembly Tools and Software - PART1 !!
...a sequence-assembly tool specifically intended for metagenomes. Contiguity 1.0.4 – Contig Adjacency Graph Construction and Visualisation Contiguity is interactive software for t...2693 days ago
ResearchLabs posts
- ...endure & Lieberman Aiden, Nature Biotechnology 2012), and generally fall into one of six areas: 1) next-generation human genetics; 2) genome contiguity & completeness; 3) massiv...
3868 days ago
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fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro means of generating libraries comprised of 9216 indexed pools, each of which contains thousands of sparsely sequenced long fragments ranging from 5 kilobases to >1 megabase. This software, fragScaff, leverages...Tags: fragScaff, Genome, Assembly, Contiguity, Preserving, Transposition, Genome, Assembly
2190 days ago
auN: a new metric to measure assembly contiguity
Given a de novo assembly, we often measure the “average” contig length by N50. N50 is neither the real average nor median. It is the length of the contig such that this and longer contigs cover at least 50% of the assembly. A longer N50 indicates better contiguity. We can si...Tags: auN, new, metric, measure, assembly, contiguity
649 days ago
