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WGS Celera Assembler version 8.3rc2
...r 10 11:41 computeCoverageStat-rwxrwxr-x 1 urbe urbe 9,8K Apr 10 11:41 convert-fasta-to-v2.pl-rwxrwxr-x 1 urbe urbe 48K Apr 10 11:41 convertOverlap-rwxrwxr-x 1 urbe urbe...2580 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...Sw5 -L100 -m0 -t8 reads.fq reads.fq | gzip -1 > reads.paf.gz Then we can assemble miniasm -f reads.fq reads.paf.gz > reads.gfa Convert GFA to FASTA: awk '/^S/{pr...2348 days ago
CrossMap: a program for convenient conversion of genome coordinates
...enome coordinates between assemblies. It’s not a program for aligning sequences to reference genome. We do not recommend using CrossMap to convert genome coordinates between sp...2163 days ago
BlobToolKit: A toolkit for genome assembly QC
...n and filtering of preliminary or published genomic datasets even for highly fragmented assemblies. BlobTools2 is a command-line program to convert assemblies and analysis resul...1533 days ago
Pandoc: a universal document converter
If you need to convert files from one markup format into another, pandoc is your swiss-army knife. Pandoc can convert almost all formats https://pandoc.org/index.html1044 days ago