Results for "Core"
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Public Databases for Bioinformatics !
...r: dhara: Synology 3614 Storage Appliance 4 Core Xeon 108TB disk storage 10G...ers: nandi: Kundaje and Phi Server 24 intel cores 256GB RAM 500GB of SSD sto...durga: Montgomery and sensitive data 24 intel cores 256GB RAM 500GB of SSD RAI...1150 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other...1230 days ago
Managing and Analyzing Next-Generation Sequence Data
Centralized Bioinformatics Core Facilities provide shared resources for the computational and IT requirements of the investigators in their department or institution. As such, they...3649 days ago
Bioinformatician’s Pocket Reference !!
...sion with neighbours (unless under special circumstances!) in our own mother-tongue. Today every bioinformatician keeps more than few languages and core IT toolkits on their plate. I...3630 days ago
A simple tutorial for a complex ComplexHeatmap
ComplexHeatmap (Gu, Eils, and Schlesner (2016)) is an R Programming Language (R Core Team (2020)) package that is currently listed in the Bioconductor package reposito...1140 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
...(GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including...2940 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...uch as repeat masking, since it will automatically detect ambiguous mappings. Satsuma has parallelization built-in and is designed to run on multi-core architectures. The run-time f...2925 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions:Â set the read length/configur...2177 days ago
- ...ding: joining of genome fragments using paired-end and/or mate-pairs reads gap closing Redundans is: fast & lightweight, multi-core support and memory-optimised,...
2814 days ago
- ...end reads to achieve an accuracy comparable to other assemblers, this is not a favorable solution.Fermi is designed to be used on a multi-core Linux machine with large shar...
2806 days ago
