MeDuSa: a multi-draft based scaffolder
...ithm for genome scaffolding. MeDuSa exploits information obtained from a set of (draft or closed) genomes from related organisms to determine the correct order and orientation of the...2275 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing...ta or fastq format. These sequences will be corrected (e.g. PacBio reads). The co...a.The output is a file in fasta format with corrections of the long reads, and ad...1984 days ago
ECTOOLS: Long Read Correction and other Correction tools
Long Read Correction and other Correction tools This package is a loose collection of scripts. To run the correctionroutine see the section bel...e. Contact: gurtowsk@cshl.edu In short, the correction algorithm takes as input t...2315 days ago
LRCstats: Long Read Correction Statistics
...ne for benchmarking DNA long read correction algorithms for long reads...in downstream analysis. Long read correction algorithms reduce the erro...ration sequencing technologies to correct long reads. Of course, some...as the overall error rates of the corrected long reads. https://www.he...2315 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
...ffolds). The join between two contigs A and B is considered correct if: Their relative orientation is correct Their relative order is corr...in the reference scaffolding in the sense of the number of correct links. https://githu...2239 days ago
2163 days ago
FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
FMLRC, or FM-index Long Read Corrector, is a tool for performing hybrid correction of long read sequencing using the B...e Bruijn graph. Each long read is then corrected independently by identifyin...a longer "K-mer". This allows FMLRC to correct through low complexity region...2097 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...ologies and the more erroneous long reads are corrected using the short reads. Curr...first machine learning-based long read error correction algorithm. The algorithm m...rebellum polyA RNA-seq, we show that Hercules-corrected reads have the highest mapp...2087 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
...of hybrid approaches that leverage the high quality of short reads to correct errors in long reads.We introduce CoLoRMap, a hybrid method for correcting noisy long reads, such as...2087 days ago
LRCstats: a tool for evaluating long reads correction methods
...ource pipeline for benchmarking DNA long read correction algorithms for long reads...ause issues in downstream analysis. Long read correction algorithms reduce the erro...by next generation sequencing technologies to correct long reads.2085 days ago