miniasm: very fast OLC-based de novo assembler for noisy long reads
...e to generate long contigs from raw PacBio or ONT reads without error correction. It also shows that mini...and (ii) assembly. Designed for long, noisy reads, they do not have a correction or consensus step, and theref...2350 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...make use of these data, we developed a novel open-source hybrid error correction algorithm Nanocorr (https://g...% error). With this new method we were able to perform a hybrid error correction of the nanopore reads using c...2349 days ago
Musket: a multistage k-mer spectrum based corrector
...p;is a well-established leading next-generation sequencing read error correction algorithm targetting Illumina...rrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage wo...2342 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...rge genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the high accuracy of Illumina sequence by eschewing an explicit error correction step which we argue to be red...2327 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
...e usage of Ra by integrating it into a complete de novo assembly tool. Unlike other state-of-the-art assemblers, Ra does not have an error correction step. Instead, it relies...2320 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
Jabba is a hybrid error correction tool to correct third generation (PacBio / ON...es will be corrected (e.g. PacBio reads). The corrections will be written to a file Ja...sta.The output is a file in fasta format with corrections of the long reads, and addit...1981 days ago
ECTOOLS: Long Read Correction and other Correction tools
Long Read Correction and other Correction tools This package is a loose collection of scripts. To run the correctionroutine see the section below....Contact: gurtowsk@cshl.edu In short, the correction algorithm takes as input the...2312 days ago
LRCstats: Long Read Correction Statistics
...urce pipeline for benchmarking DNA long read correction algorithms for long reads out...use issues in downstream analysis. Long read correction algorithms reduce the error r...rrect long reads. Of course, some long read correction algorithms are better than ot...2312 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus outperforms PacBioToCA/LSC in terms of accuracy and contiguity/sensitivity (http://dx.d...2312 days ago
2192 days ago