Pacasus: Correction of palindromes in long reads from PacBio and Nanopore
Tool for detecting and cleaning PacBio / Nanopore long reads after whole genome amplification. Check the poster from the Revolutionizing Next-Generation Sequencing (2nd e...2000 days ago
HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning
HECIL—Hybrid Error Correction with Iterative Learning—a hybrid error correction framework that determines a correct...learning paradigm that enhances the correction policy at each iteration by i...onfidence metrics assigned to prior corrections.1950 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
NxRepair is a python module that automatically detects large structural errors in de novo assemblies using Nextera mate pair reads. The decector will break a contig at th...1927 days ago
wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly
...novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus...1917 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...on takes less than a minute and the whole pipeline with SV calling takes ~2 minutes. Intact ordering and orienting of contigs. Chimeric contig correction GFF lift-over Structural va...1844 days ago
FLAS: fast and high throughput algorithm for PacBio long read self-correction.
FLAS, a wrapper algorithm of MECAT, to achieve high throughput long read self-correction while keeping MECAT's fast speed. FLAS finds additional alignments from MECAT prealigned long reads to improve the correction throughput, and removes misalignments for accuracy.1778 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...uction takes less than a minute and the whole pipeline with SV calling takes ~2 minutes. Intact ordering and orienting of contigs. Misassembly correction GFF lift-over Structural va...1652 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...allow trimming (default: false) -maxcorK INT: the maximum number of correction within k-bp window (default:...corrected reads to stdout (default: not used) -verbose: output some correction information to stdout (defaul...1551 days ago
Musket - a multistage k-mer spectrum based corrector
...p;is a well-established leading next-generation sequencing read error correction algorithm targetting Illumina...rrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage wo...1551 days ago
MEC: Contig Misassembly Correction
MEC, to identify and correct misassemblies in contigs. Firstly, MEC takes fragment coverage as the feature to detect the candidate misassemblies. Then, it can distinguish...1551 days ago