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wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly
By BioStar 2129 days ago
https://github.com/ruanjue/wtdbg2
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output.
./wtdbg2 -x rs -g 4.6m -t 16 -i reads.fa.gz -fo prefix ./wtpoa-cns -t 16 -i prefix.ctg.lay.gz -fo prefix.ctg.fa
