2883 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...mic Assemblies Merger for Next Generation Sequencing), whose primary goal is to merge two or more assemblies in order to enhance contiguity and correctness of both. GAM-NGS does not rel...2695 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its full potential...2544 days ago
QUAST-LG: Versatile genome assembly evaluation
...overage regions, we introduce a concept of upper bound assembly for a given genome and set of reads, and compute theoretical limits on assembly correctness and completeness. Using QUAST...2020 days ago
Versatile genome assembly evaluation with QUAST-LG
...ieved by both use of new fast aligner (minimap2) and the refactoring of alignment analyzing modules New k-mer-based completeness and correctness metrics BUSCO added for enha...1962 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...to estimate weak kmer count threshold, lower for more divergent genome (default: 0.95) -ek INT: expected number of kmers; does not affect the correctness of program but affects the me...1552 days ago
Tadpole: an assembler, error-corrector, and read-extender
...aph analysis or scaffolding, and therefore, is not particularly good for diploid organisms. Tadpole is very conservative and optimized for correctness rather than length; which is...1552 days ago