Results for "Coverage"
Top-level pages
Some useful Bioinformatics links
...uang.de/circlize_book/book/introduction.html#a-qiuck-glance Creating a coverage plot using BEDTools and R https://davetang.org/muse/2015/08/05/creating-a-coverage-plot-using-bedtools-and-r/ Ev...2255 days ago
- ...yfile_1.fq) | cut -f 5-8 | \tr "\t" "\n" > myf2.fq To filter and sort contig identifiers from SPAdes assembly (e.g. here lenght >= 4000 + coverage >=100): grep "^>" scaf...
2231 days ago
- ...j python-excelerator python-matplotlib-doc python-qt4 python-sip python-traits python-wxgtk3.0 ttf-staypuft python-gmpy2 python-mpmath-doc python-coverage python-nose-doc python-numpy-...
2204 days ago
Understanding BLASTn output format 6 !
...er) stitle Subject Titlesalltitles All Subject Title(s), separated by a '<>'sstrand Subject Strandqcovs Query Coverage Per Subjectqcovhsp Query Coverage Per HSPdefault values are:-ou...2152 days ago
List of non-commercial NGS genotype-calling software
...ify the considerable uncertainty associated with genotype calling, and will especially benefit the growing number of studies using low- to medium-coverage data. A list of progra...2110 days ago
Short-read assembly using Spades !
...forward reads -2 is input file of reverse reads --careful minimizes mismatches and short indels --cov-cutoff auto computes the coverage threshold (rather than the de...839 days ago
Mitochondrial genome assembly tools !
...mitochondrial genome assembly, especially in cases with relatively low coverage. Velvet: Velvet is a de novo...cific characteristics of your sequencing data, such as read length and coverage, as well as the complexity of...256 days ago
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