Illumina based assembly pipeline steps !
...variant screenshots with annotation tracks (ASCIIGenome) Intersect variants across callers (BCFTools) De novo assembly Primer trimming (Cutadapt; amplicon data only) Choice...879 days ago
2916 days ago
2701 days ago
Tags: Bioinformatics, Cutadapt, NGS, Reads, Fastq, Sequencing
2916 days ago
Tags: Bioinformatics, Analysis, Assembly, NGS, Cutadapt
2701 days ago
Comment on "Software packages for next gen sequence analysis"
Thanks for the useful list. I found this CUTADAPT useful. It searches for the adapter in all reads and removes it when it finds it.http://cutadapt.readthedocs.org/en/stable/guide.html3068 days ago