Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.
...ssessment of de novo genome assemblies.
In brief, our scripts create Cytoscape files to visualize transcript...s
BLAT (tested with Standalone BLAT v. 32×1). Source Binaries .Cytoscape (tested with versions 2.7.0,...
ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clust...ifiers can be uploaded from a text file or interactively from a network of Cytoscape. The type of identifiers supp...