Computational resources for TE discovery and TE detection
...s Finder http://tandem.bu.edu/trf/trf.html Transposon Cluster Finder http://www.mssm.edu/labs/warbup01/paper/files.html TE nest http://www.plantgdb.org/prj/TE_nest/TE_nest.html...2286 days ago
Python learning resources for bioinformatics and computational biologist !
...Mexico Tech (2.7) Python 3 Official Documentation (PDF, EPUB, HTML, TEXT) (3.x) Python Cookbook - David Beazley Python Data Science Handbook - Jake VanderPlas (HT...2267 days ago
Some useful Bioinformatics links
...ic assemblies https://github.com/ksahlin/BESST reubwn/scripts: Useful scripts for various things https://github.com/reubwn/scripts ICEberg http://db-mml.sjtu.edu.cn/ICEberg/index...2253 days ago
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Protein-Protein Interaction Sites Predictions !
...ED Web server for predicting soft metal binding sites in proteins DBD-Hunter A knowledge-based me...e method predicts residues that contact DNA using neural network method iDBPs Predicts DNA binding prote...2214 days ago
Ligand Docking Tools and Software !
...irical), ASP (knowledge based) ICM Stochastic (MC) Flexible ligand and partially flexible targetICM SF (empirical) ParDOCK Stochastic (MC) RigidBAPPL (empirical) PLANTS Stoc...2214 days ago
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LINKS scaffolder bloomfilter setting !
...me/urbe/anaconda3/lib/perl5/5.22.0/x86_64-linux-thread-multi/CORE/ -fPIC -Dbool=char -O3 BloomFilter_wrap...me/urbe/anaconda3/lib/perl5/5.22.0/x86_64-linux-thread-multi/CORE/ -fPIC -Dbool=char -O3 In file included...2163 days ago
List of non-commercial NGS genotype-calling software
...rograms for genotype and SNP calling : SOAP2 http://soap.genomics.org.cn/index.html Single-sample High-quality variant database (for example, dbSNP) Package for NGS data anal...2108 days ago
Tools for Geospatial data analysis !
...kd.in/dfSsE-MB GDAL - https://lnkd.in/dYBJBaAY Geohash - https://lnkd.in/d_NxJ4_M GeoJSON - https://lnkd.in/daGs2WYq GeoPandas - https://lnkd.in/dBTFKKV3 Geopy - https://lnkd.i...422 days ago