BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short starting DNA fragment, often a EST or partial gene segment, as "primer", to recursively blast...2147 days ago
2175 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and accuracy. We found that previously des...2174 days ago
WhatsHap: fast and accurate read-based phasing
WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but w...2161 days ago
2083 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...a posterior transition/emission probability distribution for each long read and uses this to correct errors in these reads. Using datasets from two DNA-seq BAC clones (CH17-157L1 an...2077 days ago
SimLoRD: A read simulator for third generation sequencing reads
...ay be incorporated at a later stage.) The read lengths can be determined in four ways: drawing from a log-normal distribution (typical for genomic DNA), sampling from an existing F...2075 days ago
LRCstats: a tool for evaluating long reads correction methods
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced...2075 days ago
CBS Comparative Microbial Genomics group - BioTools download page
...omes including 10 genera. The analyses include 16S rRNA phylogeny, basic DNA and codon statistics, proteome comparisons using BLAST and graphical analyses of DNA structures. Paper:&nbs...2075 days ago
2024 days ago