ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. It can be used to identify and analyse regions of similarity and difference between genomes and to...
Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mam...raw reads.Fermi follows the overlap-layout-consensus paradigm and uses the FM-DNA-index...
Murasaki is an anchor alignment program that is
exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU...
Development of cancer is driven by somatic alterations, including numerical and structural chromosomal aberratio...somal CNA-associated breaks by a genome-wide approach, which can be applied to DNA copy...
Metagenomics sequencing projects collect samples of DNA from uncharacterized environments that may contain hundreds or even thous...ta which uses interpolated Markov models (IMMs) to taxonomically classify DNA seque...
HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especi...matics tools in order to extract target sequences from high-throughput DNA seque...
SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA seque...
The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process.
EAGER en...rt tools for each step as well as new complementary tools tailored for ancient DNA data...
LAST can:
Handle big sequence data, e.g:
Compare two vertebrate genomes
Align billions of DNA reads to a genome
Indica...Use sequence quality data properly.
Compare DNA to pr...