Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects...introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be appli...while remaining sensitive to low coverage areas of sequencing projects. Using published dat...2558 days ago
2557 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a co...2554 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using d...2554 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing as...bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easi...2554 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignmen...2553 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...tgun and amplicon sequence libraries based on DNA, RNA or proteic reference seq...ic shotgun and amplicon datasets from current sequencing technologies such as Sanger,...der specific hypothesis, e.g. with or without sequencing errors, or with low or high c...2553 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262537 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http...very high sensitivity and precision across different error profiles, rates and sequencing technologies even with defaul...2539 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software...lyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis f...nbsp;fully analyzed next-generation sequencing data. Experimental results ca...2511 days ago