Results for "DNA sequencing"
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Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequen...2874 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly...
2874 days ago
- FQC is software that facilitates quality control of FASTQ files by carrying out a...metrics into an interactive dashboard designed to richly summarize individual sequencing runs. The dashboard groups sa...
1277 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox...s you to work with hundreds of samples containing hundreds of millions of sequencing reads. Blast-like analysis ca...
2846 days ago
- Genome STRiP (Genome STRucture In Populations) is...overing and genotyping structural variations using sequencing data. The methods are designe...t heterogeneous data sets, including variations in sequencing depth, read lengths and mixtu...
2803 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo a...
2816 days ago
- ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. It can be used to identify and analyse regions of similarity and difference between genomes and to...
2802 days ago
- Redundans pipeline assists an assembly of heteroz...sembled contigs, paired-end and/or mate pairs sequencing libraries and returns&nb...-to-medium size genomes flexible toward many sequencing technologies (Illumina, 454 o...
2808 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://e...OPERA-long-read that enables scaffolding with long-reads from third-generation sequencing technologies (PacBio or Oxfor...2800 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mam...raw reads.Fermi follows the overlap-layout-consensus paradigm and uses the FM-DNA-index&...
2800 days ago
