Results for "DNA sequencing"
Top-level pages
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
Hidden Markov Models, the Viterbi Algorithm, and CpG Islands (in VB6) Problem : The CG island is a stretch of DNA (usually longer than 200 base...wise explanationand implementation steps at http://dna.cs.byu...3819 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...tect and characterize protein-DNA interactions. Furey, Nat Rev Genet 1...ence of editing or are simply sequencing errors - the authors stand by...iant identification in pooled DNA using R. Altmann et al., Bioinformat...otyping using next-generation sequencing. Davey et al., Nat Rev Genet...3774 days ago
List of bioinformatics open source projects/software.
...mboss.sourceforge.net/ Suite of packages for sequencing, searching, etc. Gagg...ietary Vector NTI, a tool to analyze and edit DNA sequence files Integrated Genome Br...software package to analyse next-generation resequencing data3751 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ulate the evolution of recombinant DNA sequences in continuous time...ih.gov/gasp/GemSIM Next generation sequencing read simulator http://...am that simulates highly divergent DNA sequences and protein superfa...SP A program for the simulation of DNA sequence evolution across a phylogen...3732 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp : http://sts.bioengr.uic.ed...tection of protein–protein, protein–small ligand and protein–DNA bindin...3739 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" file format...3623 days ago
Next generation sequencing in R or bioconductor environment
...s produced by high throughput sequencing technologies. While support is provided for many sequencing technologies, this pac...lling package for identifying DNA binding sites of proteins in ChIP-Se...TopHat SpliceMap SplitSeek DNA-Methylation Data Analysis methy...3619 days ago
Commercial and public next-gen-seq (NGS) software
...flows for: ChIP-Seq, RNA-Seq, DNA-Seq, DNA Methylation, Gene Expression,...s, emerged by next-generation sequencing technology, back to the refer...ompleted will handle next-gen sequencing data. A partially implemented...he Arabidopsis Genome Reveals DNA Methylation Patterning" Nature paper...3514 days ago
- Since few years miRNA has shown to play...and tools related with miRNA: miRNA Sequencing data analysis : http://t...: http://starbase.sysu.edu.cn/ Sequencing based miRNA DB : http://...iction.html Idea of analysing miRNA Sequencing data : http://www.illumina.c...
3491 days ago
Apps for Busy Bioinformatics Researchers !!!
...r the opening and analysis of DNA sequencing files - ab1. It includ...tps://itunes.apple.com/us/app/dnaapp/id854944694?mt=8 DNAApp: For and...r the opening and analysis of DNA sequencing files - ab1. It includes hand...yzing cases with whole genome sequencing data that have been published...3536 days ago
