Results for "DU"
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...sembled contigs using mate-pair data. It also produces editable scaffold maps, al...on WiseScaffolder includes 4 subcommands: dumpconfig generates a configura...ae, the estimation of contigs copy number and produces valuable outputs for the m...2866 days ago
- The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release
2852 days ago
- ...ds are designed to detect shared variation using data from multiple individuals.Genome STRiP looks both ac...The background population does not need to be matched to the target individuals.
2811 days ago
- ...tuations where A5-miseq is not the right tool for the job. In order to produce accurate results, A5-miseq...a different assembler if a tool like FastQC reports your data quality is dubious. You have been warned! D...
2830 days ago
TARDIS: Toolkit for automated and rapid discovery of structural variants
...DIscovery of Structural variants Requirements zlib (http://www.zlib.net)mrfast (https://github.com/BilkentCompGen/mrfast)htslib (included as submodule; http://htslib.org/)Fetchin...2535 days ago
- ...s or otherwise problematic sites. The R package vcfR provides tools to facilitate this filtering as well as to visualize the effects of choices made during this process.
2829 days ago
GeneValidator - Identify problems with predicted genes
...ps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST databases. The results produced can be used by biocurators...2822 days ago
- ...ced genomes that have not been well annotated. Look for KaKs calculation: https://github.com/fumba/kaks-calculator http://longlab.uchicago.edu/?q=gKaKs http://www.ncbi.nlm...
2818 days ago
Sushi: An R/Bioconductor package for visualizing genomic data
Sushi: An R/Bioconductor package for visualizing genomic data2817 days ago
- Redundans pipeline assists an assembly...;than the input contigs. In addition, Redundans will automatically ...The pipeline consists of three steps/modules: redundancy reduction:...es (paired-end, mate pairs, fosmids) modular: every step can be ommited...
2816 days ago
