Results for "Data"
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CNIDARIA: fast, reference-free phylogenomic clustering
...nce-free methods analyse unprocessed sequencing data without relying on prior know...tool for clustering genomic and transcriptomic data with no limitation on ge-nome...l.com Supplementary information: Supplementary data are available at Bioinformati...2885 days ago
- ...Anvi’o is an analysis and visualization platform for ‘omics data. Please find the methods pap...of our methods paper An analysis and visualization platform for 'omics data http://merenlab.org/proj...
2885 days ago
- ...and detected several highly probable horizontally acquired genes. We then compared the method to existing HGT detection tools using a larger strain data set. When combined with addi...
2879 days ago
Linux command line exercises for NGS data processing
...ce-srv2 ~/linuxTutorial]$ I have deliberately chosen Awk in the exercises as it is a language in itself and is used more often to manipulate NGS data as compared to the other comm...2879 days ago
- ...ysis. The primer is also designed to be self-contained and hands-on, meaning that you only need to install SAMtools, and no other tools, and sample data sets are provided. Terms in b...
2878 days ago
- ...iseq_ is a pipeline for assembling DNA sequence data generated on the Illumina seq...ce accurate results, A5-miseq requires Illumina data with certain characteristics....nt assembler if a tool like FastQC reports your data quality is dubious. You have...
2822 days ago
- ...between regulatory elements. These interaction datasets are important resources t...on and public ontologies, making sense of these datasets demands integrative and e...y available functional genomics and interaction datasets, 3) querying network comp...
2874 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...ow and computationally expensive, forcing researchers to use faster abundance estimation programs, which only classify small subsets of metagenomic data. Using exact alignment of k-m...2874 days ago
- ...ased bioinformatics suite to analyze biological data acquired through varied avenu...ming upper-quantile normalization on expression data or convert genome wide gene e...xpression to z-scores when comparing expression data from different platforms. Mo...
2872 days ago
- ...sequence alignment for browsing, blasting, probing, and downloading. The data and tools presented by greeng...s. If you are an ARB user, you can use greengenes to keep your own local database current.
2872 days ago
