Comment on "Running Trinity on RNA-seq !"
...your organism based on your assembled transcripts and the input RNA-Seq data. Such studies might include:...gical replicates make sense. If there are any confounding aspects to the data, such as outliers or batch ef...2115 days ago
Comment on "Installing Perl environment on Linux"
...uild-0.4224Configuring BioPerl-1.007002 ... OK==> Found dependencies: Data::Stag, URI::Escape, IO::String, Test::Most--> Working on Data::StagFetching http://www.cpan...2118 days ago
2129 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...f defaults (the ava-pb in the code below) for analyzing PacBio data. Minimap only accepts two FAS...ocumentation; there are other options available. miniasm \ -f \ /home/data/20170911_oly_pacbio_cat.fastq...2159 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...org/biocLite.R") biocLite("rhdf5") install.packages(c("shiny","bit64","data.table","svDialogs")) q()...we are ready to go. First off, let’s extract the 2D sequence data as FASTQ from the MinION data...2166 days ago
Comment on "SPAdes hybrid genome assembly"
use SPAdes to assemble the data. SPAdes is a swiss-army knife of genome assembly tools, and by default includes read correction. This takes up lots of RAM, so we ar...2166 days ago
2167 days ago
Comment on "List of genome announcement, notes and reporting journals"
Genomics data also accept draft genome assembly papers https://www.sciencedirect.com/journal/genomics-data2174 days ago
Comment on "Basic command-line to run BLAST"
...otein] wget http://www.genoscope.cns.fr/adineta/data/Adineta_vaga.v2.pep.fa.gz--20...10:23:14-- http://www.genoscope.cns.fr/adineta/data/Adineta_vaga.v2.pep.fa.gzReso...ime: 03/14/2018 11:52:20New DB name: /home/urbe/DATA/Human_vs_Avaga_protein/mouse....2236 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...If equal to 0 nothing except strict output will be placed on stdout. [5] -s, --start INT Ordinal number of the read from which to start processing data. [0] -n, --numreads INT Numbe...2284 days ago