Results for "Data Mining & Statistical Study"
Bio-Scripts
set -e echo "Running reapr version 1.0.18 pipeline:" echo "/home...5 -n 25 WadinetaGapFilled.gapfilled.iteration1.fa /home/urbe/DATA/Origin...ocha.160226.HiSeq2000.FCB.lane1.gcap_dev.R1.fastq /home/urbe/DATA/...2112 days ago
Perl script to find palindromic pattern !
#!/usr/bin/perl use strict; use warnings; use strict; my %invert; @invert{ qw[ A C G T ] } =...1-$pals), substr( $in, $p1-$pals, ($pals+1)*2 ), $p1-$pals; } } __DATA_...2112 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/broa...: run using Google cloud dataproc command...after the -- will be passed to datapr...r germline samples given counts data...d) Checks that all data in the...he concordance between genotype data...
2088 days ago
- ➜ upgrade_oh_my_zsh Updating Oh My Zsh remote: Counting objects: 484, done. remote: Compressin...lugins/emoji/README.md | 6 +- plugins/emoji/emoji-data....
2087 days ago
- (denovo_asm) [jnarayan@hmem00 ~]$ git clone https://github.com/cdunn2001/git-sym.git fatal: dest...les/git-sym.makefile 'greg200k-sv2.2' curl -L https://downloads.pacbcloud.com/public/data/...
2047 days ago
- #! /usr/bin/Rscript ## Collect arguments args
2016 days ago
CollectGcBiasMetrics.jar will generate a GC bias plot for each contig
samtools index aln-pe.mapped.sorted.bam for i in $(samtools view -H aln-pe.mapped.sorted.bam |...i > aln-pe.mapped.sorted.$i.bam; java -Xmx2g -jar $(which CollectGcBiasMetrics.jar) R=data/...2016 days ago
- $ sudo apt install npm Reading package lists... Done Building...node-forever-agent node-form-data node-fs.realpath node-fstr...e-nopt node-normalize-package-data node-npmlog node-once node...node-forever-agent node-form-data...amd64 node-normalize-package-data all 2....
1566 days ago
Perl script to remove duplicated lines !
#!/usr/bin/perl use strict; use warnings; { $_ = ; my $next_line; while( $next_li...$next_line; } continue { $_ = $next_line; } print $_ if eof; } __DATA_...1573 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paired FASTQ format) fr...mp is in the SRA toolkit. It allows directly downloading data from a...ID fastq-dump --split-files SRR1770413 #SRA stores data...1572 days ago
