HTTDB - Horizontally transferred transposable elements database
...view of such phenomena. Based on these concerns, we developed the HTT database to keep an updated repository...tes, allowing not only TE specialists to add new events and search the database, but also non-specialists. Mo...2291 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
...calculating distances between trees of different size or including duplications, and (iv) providing seamless integration with the NCBI taxonomy database. ETE is freely available at...2264 days ago
Generate interactive codon usage plots
Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demo2255 days ago
2182 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...olutionarily conserved transcription factor binding sites in multiple alignments. In addition, Mulan supports two-way communication with the GALA database; alignments of multiple speci...2078 days ago
swgis v2.0 : a seqword genomic island sniffer
...enomes. swgis v2.0 was tested on several eukaryotic species of different lineages. all identified genomic islands were deposited in the eugi database. download swgis v2.02009 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
...directly. Or you could send us the genome sequence by email. Then we will do the analysis work for you. https://academic.oup.com/database/article/doi/10.1093/database/baw084/2630454...1996 days ago
BLAST options, setting and defaults
...fast search algorithm that is used to separately search protein or DNA databases. BLAST is best used for sequ...ord size:the size of the initial word that must be matched between the database and the query sequence defau...1970 days ago
Biotite: A general framework for computational biology
...thon. Biotite consists of four sub packages: sequence, structure, databases, and application. The s...e analysis of sequence and structural data analysis respectively, database downloads files from the...1962 days ago
1949 days ago