Retrieve NCBI GenBank records with a range of accession numbers
..., outputFile => undef, database => undef, returnType =...=> \$param{outputFile}, 'd|database=s' => \$param{database},...} ) ) or !( defined( $param{database} ) ) or !( defined( $par...etstart&retmax=$retmax&db=$param{database}&query_key=$query_key&WebEnv=...2915 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
...c/universe amd64 dos2unix amd64 7.3.4-3 [351 kB] Fetched 351 kB in 3s (130 kB/s) Selecting previously unselected package dos2unix. (Reading database ... 177704 files and director...1176 days ago
Blast script to index and extract sequence !!
...AACCAATATAGGCATAGCGCACAGACAGATAAAAATTACAGAGTAC # generate the blast database $ makeblastdb -dbtype nucl -...AGGTCACTAAATACTTTAACCAATATAGGCATAGCGCACAGAC .... # query the blast database by id and coordinates $ blas...2851 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...oads/atom-amd64.deb atom amd64 1.54.0 [126 MB] Fetched 845 kB in 4s (219 kB/s) Selecting previously unselected package gconf2-common. (Reading database ... 194272 files and director...1175 days ago
2692 days ago
BASH script for SelfBLAST a genome
...ILE=seeRES THREAD=20 SEQ="" echo "User $USER provided $# arguments, Detail of the arguments: $@" if [ -f $MYDB.nhr ] then echo "BLAST database for MergedContigs.fasta genom...2651 days ago
Extract fasta sequence from a multifasta file with coordinates
...die "Sequence $seq not found. \n" } print ">$id\n", "$sequence\n"; } __END__ use Bio::DB::Fasta; # Create database from a directory of Fasta fil...2531 days ago
Installing Platypus on Ubuntu !
...) (Reading database ... 501922 files and director...2018 days ago
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