Results for "Database Development"
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In a nutshell Anvi’o is an analysis and visualization platform for ‘omic...ithout the help of many people who directly or indirectly contributed to its development. Here is the acknowledgements...2890 days ago
- DarkHorse is a bioinformatic method for rapid, automated identificati...l ortholog matches from a reference database of amino acid sequences, then...o the phylogenetic distance between database match sequences and the query...ture of the DarkHorse HGT Candidate database is...
2884 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at distal...oped in Java and JavaScript, utilizing an Apache Tomcat web server and MySQL database an...
2879 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-th...nomy by comparing it to a reference database containing microbial and vira...subset of the non-redundant protein database nr used by NCBI BLAST, option...mple, only 10 GB RAM with a protein database co...
2879 days ago
- The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignme...ences. If you are an ARB user, you can use greengenes to keep your own local database cu...
2877 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multi...PALS >Whole-genome alignment. PREFAB >Protein Reference Alignment Database.&n...2871 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox for...ehensive. MEGAN6 offers a large range of analysis tools, and is under active development....
2851 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two...eler assists in automating the runs of RECON and RepeatScout given a genomic database an...
2827 days ago
- ...t-end to comparative genome datasets warehoused in a chado relational database. It was developed by the bioi...formatics department at The Institute for Genomic Research (TIGR) and development continues at the J. Craig Ven...
2807 days ago
- Development of cancer is driven by somatic alterations, including numerical and structural chromosomal aberrations. Currently, several computational methods are available...
2164 days ago
