Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
...compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the lo...2307 days ago
mojolicious: a next generation web framework for the Perl programming language.
...ns, commands, Perl-ish templates, content negotiation, session management, form validation, testing framework, static file server, CGI/PSGI detection, first class Unicode support...2302 days ago
alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
Horizontal gene transfer (HGT) is the transmission of genes between organisms by other means than parental to offspring inheritance. While it is prevalent in prokaryotes...2243 days ago
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ReMILO: reference assisted misassembly detection algorithm using short and long reads.
ReMILO, a reference assisted misassembly detection algorithm that uses both short reads and PacBio SMRT long reads. ReMILO aligns the initial short reads to both the contigs and refere...2128 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
...SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, an...2094 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...fs between accuracy and read length. Several studies require long and accurate reads including de novo assembly, fusion and structural variation detection. In such cases researchers of...2082 days ago
2044 days ago