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  • HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome...

HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly

https://github.com/mapleforest/HaploMerger2/releases/

HM2 can process any diploid assemblies, but it is especially suitable for diploid assemblies with high heterozygosity (≥3%), which can be difficult for other tools. This pipeline also implements flexible and sensitive assembly error detection, a hierarchical scaffolding procedure and a reliable gap-closing method for haploid sub-assemblies.

Source code, executables and the testing dataset are freely available at https://github.com/mapleforest/HaploMerger2/releases/.