FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
Sequence alignment algorithms are widely used to infer similarirty and the point of d...leotide) and results in an optimal alignment faster than conventional dymanic programming techniques. It is also better...2338 days ago
zPicture: A dynamic blastz alignment visualization
zPicture is a dynamic alignment and visualization tool that is based on blastz alignment program utilized by PipMaker. zPicture alignments can be automatically submitted to rVista 2.0 to identify conserved transcription factor binding sites.2285 days ago
LRCstats: Long Read Correction Statistics
...of alignment file and then aligning the corrected long reads (cLR) to the Ref-uLR two-way alignments to create three-way alignments using a dynamic programming algorithm. Statistics on thes...2310 days ago
mojolicious: a next generation web framework for the Perl programming language.
Back in the early days of the web, many people learned Perl because of a wonderful Perl library called CGI. It was simple enough to get started without knowing much...2303 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and en...tober - Uppsala2017 March - Uppsala2017 November - UppsalaRNAseq tutorials R Programming Foundations for Life Scientis...2208 days ago
Many-to-many pairwise alignments of two sequence sets
...-Wunsch alignment algorithm to find the optimum alignment (including gaps) of two sequences along their entire length. The algorithm uses a dynamic programming method to ensure the alignmen...2145 days ago
LAMSA: fast split read alignment with long approximate matches
...ariations or sequencing errors, and mitigate the effect of repeats. The alignments of the fragments are then used for implementing a sparse dynamic programming (SDP)-based split alignment a...2180 days ago
nQuire: a statistical framework for ploidy estimation using next generation sequencing
nQuire provides a statistical framework to study organisms with intraspecific variati...reserved. It is implemented as a stand-alone Linux command line tool in the C programming language and is available at...2038 days ago
RopeBWT2: Incremental construction of FM-index for DNA sequences
RopeBWT2 is an tool for constructing the FM-index for a collection of DNA sequences. It works by incrementally inse...This algorithm can be largely considered a mixture of BCR and dynamic FM-...2017 days ago
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