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Best practices in bioinformatics training for life scientists
...lso to understand their underlying fundamental theoretical and practical concepts. Find the detail paper at http://bib.oxfordjournals.org/content/early/2013/06/25/bib.bbt043.full3921 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotat...3577 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing...3577 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...ure for technologies where the error rates and error profiles can vary widely across, or even within, sequencing runs. http://biorxiv.org/content/early/2015/06/10/0207193228 days ago
Scaffolding of a bacterial genome using MinION nanopore sequencing
...ally longer reads is emerging, notably the Pacific Biosciences (PacBio) RS II system and the MinION system, released in early 2014 by Oxford Nanopore Technologies through an early access program.3228 days ago
QUAST: quality assessment tool for genome assemblies
...multiple assemblies, thus is suitable for comparison. More at http://bioinf.spbau.ru/quast http://bioinformatics.oxfordjournals.org/content/early/2013/03/09/bioinformatics.btt...2954 days ago
Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'. January 20th, 2016 - New! Bpipe...2909 days ago
GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST databases. The results prod...2812 days ago
GAGE : Genome Assembly Gold-standard Evaluation
...ed in the journal Genome Research: GAGE: A critical evaluation of genome assemblies and assembly algorithms. http://genome.cshlp.org/content/early/2012/01/12/gr.131383.1112800 days ago
