List of bioinformatics open source projects/software.
...tle An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files Integrated Gen...arge nucleotide sequence alignments Staden Package Sequence assembly, editing and analysis, primarily c...3757 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/r...simulate the evolution of recombinant DNA sequences in continuous time...rogram that simulates highly divergent DNA sequences and protein superfa...lMySSP A program for the simulation of DNA sequence evolution across a p...3738 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp...etection of protein–protein, protein–small ligand and protein–DNA binding sites. Availability:...3745 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioco...s to search a set of unaligned DNA sequences for a shared motif...ons as input and outputs short DNA sequences that are overrepres...alling package for identifying DNA binding sites of proteins in...TopHat SpliceMap SplitSeek DNA-Methylation Data Analysis...3625 days ago
Commercial and public next-gen-seq (NGS) software
...flows for: ChIP-Seq, RNA-Seq, DNA-Seq, DNA Methylation, Gene Expression,...BWA finds an alignment within edit distance 2 to the query sequ...finding near exact matches in DNA or protein databases using a...he Arabidopsis Genome Reveals DNA Methylation Patterning" Natur...3520 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS a...llows for the opening and analysis of DNA sequencing files - ab1. It in...ore @ https://itunes.apple.com/us/app/dnaapp/id854944694?mt=8 DNAApp:...llows for the opening and analysis of DNA sequencing files - ab1. It in...3542 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institut...for Advanced Scientific Research, Bangalore • National Accreditation Board for Testing &...2571 days ago
Software packages for next gen sequence analysis
...d analysis pipeline for short DNA sequences produced on a Illumi...BWA finds an alignment within edit distance 2 to the query sequ...finding near exact matches in DNA or protein databases using a...erfect 3'-most k-mers using a DNA prefix tree. Authors are Ren&...3243 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes insid...s http://www.celldesigner.org/ Edinburgh Pathway Editor Edit and draw pathway diagrams ht...onment composed of a central database and a visual edi...2288 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq,...nt, 454 (Roche), and Pac Bio DNA-Seq Feature, can annotate with...signal, predicted algorithm, cDNA position and interpretation...Mendelian blood disorders: Hereditary Spherocytosis (HS), Hereditary Elliptocytosis (HE) and H...2909 days ago