Results for "Effects"
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PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2902 days ago
- ...remove false positives or otherwise problematic sites. The R package vcfR provides tools to facilitate this filtering as well as to visualize the effects of choices made during this p...
2814 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...licitly, or set at random. The map can hold an unlimited number of loci of different types jointly, at any recombination scale (cM or lower). The effects of linkage can thus be finely...2771 days ago
- ...al base pair positions. Furthermore, multiple rearrangements in a single area of the genome can make cataloguing and interpreting their effects challenging. The Rearr...
2771 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...cross several different institutions. For such studies, Strand NGS v3.1 includes confounding variable analysis to eliminate technical effects, including batch effects; the t-SNE plot; profile and...2384 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
...statistical models behind the AYB base-calling software. By default, observations only incorporate noise due to sequencing and do not incorporate effects from more esoteric sources of...2348 days ago
Indexcov: fast coverage quality control for whole-genome sequencing
...uencing coverage to rapidly identify samples with aberrant coverage profiles, reveal large-scale chromosomal anomalies, recognize potential batch effects, and infer the sex of a sampl...2074 days ago
- .... Population and Quantitative Genetics: study of how genetic processes evolve to generate genetic variation in populations of organisms, and the effects on the patterning of variatio...
2067 days ago
Ensembl Variation - Calculated variant consequences
...variant that is mapped to the reference genome, we identify all overlapping Ensembl transcripts. We then use a rule-based approach to predict the effects that each allele of the varia...2062 days ago
- ...set (or gene set) GWAS with RGWAS.multisnp function (which tests multiple SNPs at the same time) Check epistatic (SNP-set x SNP-set interaction) effects with RGWAS.epistasis (very sl...
1525 days ago
