Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each element of data. Instead, MCE follows...lel workers. MCE enhances that model by adding the ability to chunk the next n eleme...2665 days ago
2592 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and p...direct and inverted repeats, insertion sequences, transposons and other mobile eleme...2560 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with Ox...ional information such as gene ordering and the detection of genes from mobile eleme...2553 days ago
2526 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy t...d from the UCSC Genome Browser, gene annotation, annotation of repetitive eleme...2495 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has been postulated as a method for sequencing DNA f...ures of the genome and correctly assembles gene cassettes, rRNAs, transposable eleme...2363 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe p...d associated data. PhyloXML provides elements for commonly used features, s...ion events. Using these standardized elements allows interoperability betwe...nd the provision of <property> eleme...2363 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datas...BBE: http://lbbe.univ-lyon1.fr/-Equipe-Eleme...2359 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
ACANA is an accurate and consistent alignment tool for DNA sequences. ACANA is specifically designed for aligning seq...comparative sequence analysis for identifying conserved functional regulatory eleme...2356 days ago