2571 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those i.... The precision is further increased by mapping inversions as small as 31 bp. Analysis of the predicted evolutionary...2557 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes as...n a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information suc...2552 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct s...2551 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
BEDOPS v2.4.26 is a suite of tools to address common questions raised in genomic studies...It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale...2532 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph o...nd trimming short branches. Unitigs were generated based on minimum cost flow analysis of the overlap graph and then...2504 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software sui...ration Sequencing" or NGS): Next-gen analysis for next-gen data! Some of G...bsp;Section 'System Requirements'). Analysis wizards make your life easy:S...tile modules:Advanced users and data analysis experts benefit from GeneProf...2509 days ago
2500 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary bi...about organisms. Its emphasis is on phylogenetic analysis, but some of its modules conc...cs, while others do non-phylogenetic multivariate analysis. Because it is modular, the a...2496 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches...ential and limitations of computational and experimental approaches to genome analysis.2477 days ago