GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...highly sensitive and accurate mapper for long, error-prone reads http://www.nature...igh sensitivity and precision across different error profiles, rates and sequencin...aw nanopore and PacBio reads without requiring error correction, for which a highl...2526 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...nbsp;Pichia stipitis. More than 95% of the genome is recovered, with no errors; half the assembled sequence...ith unique high quality extensions in the dataset, avoiding an explicit error correction step as used in ot...2373 days ago
QuorUM: An Error Corrector for Illumina Reads
...s at a low cost. Even with low (advertised 1%) error rate, 100 × coverage Illumina data on average has an error in some read at every base in...in the reads to correct most of the sequencing errors, thus making subsequent use...2372 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: goo...2367 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
... unitig sequences. Thus the per-base error rate is similar to the raw in...g contigs from raw PacBio or ONT reads without error correction. It also shows tha...guous (i.e. long) but very noisy (i.e. full of errors) We start with an all again...2353 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...ome. To make use of these data, we developed a novel open-source hybrid error correction algorithm Nanocorr...re incapable of assembling the long read lengths (5-50kbp) at such high error rate (between ~5 and 40% erro...2351 days ago
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
...× simulated pair-end reads from Arabidopsis thaliana with 1% base error. COPE connected over 99% of r...eads for genome assembly, the resulting contigs are found to have fewer errors and give a 14-fold improveme...2344 days ago
Musket: a multistage k-mer spectrum based corrector
...sket is a well-established leading next-generation sequencing read error correction algorithm targetti...veal that Musket is consistently one of the top performing substitution-error-based correctors. In addition...2344 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...d for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the high accuracy of Illumina sequence by eschewing an explicit error correction step which we argu...2330 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
...ease the usage of Ra by integrating it into a complete de novo assembly tool. Unlike other state-of-the-art assemblers, Ra does not have an error correction step. Instead...2323 days ago