Seal: SEquence ALignment evaluation suite
...th, repeat variability rate). Simulating reads from random locations in the genome based on input parameters of read length, coverage, sequencing error rate, and indel rate. Applyi...2316 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation (Illumina) data. Input Jabba takes as input a conc...1984 days ago
LRCstats: Long Read Correction Statistics
...umina. However, long reads are plagued by high error rates, which can cause issues...is. Long read correction algorithms reduce the error rate of long reads either thr...nments are then collected, such as the overall error rates of the corrected long r...2314 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...extensions for longer gaps less than for shorter ones to compute precise alignments. The gap model allows ngmlr to account for both the sequencing error and real genomic variations a...2204 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...y PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps between reads and does not require them to be error-corrected. After the initial...2195 days ago
2163 days ago
HALC: High throughput algorithm for long read error correction
HALC, a high throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs from the same species with a relatively low identity requirement so...2160 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for si...SMRT) reads. MECAT employs novel alignment and error correction algorithms that ar...fficient than the state of art of aligners and error correction tools. MECAT can b...2188 days ago
LAMSA: fast split read alignment with long approximate matches
...and co-linearly align them to solve the small variations or sequencing errors, and mitigate the effect of...simulated and real datasets having various read lengths and sequencing error rates, the results demonstrat...2184 days ago
2176 days ago