REAPR: a universal tool for genome assembly evaluation
...f a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and flag other errors in an assembly for manual ins...2955 days ago
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OPERA : Optimal Paired-End Read Assembler
...onwards) including refinements to its basic algorithm (to reduce local errors, improve efficiency etc.) and...nificantly improved corrected N50 and reduced the number of scaffolding errors. Furthermore, our latest rele...2800 days ago
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ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...stic method that estimates the ploidy of any given contig/scaffold based on its allele proportions. In the process, they report findings regarding errors in sequencing. The method can...2632 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation...erence set contains Illumina reads. Usually, errors in PacBio reads include many...atively less substitutions. LoRDEC can correct errors of all these types. After cor...2587 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...lose gaps left open by the assembler in a draft genome, even when using the same data sets as used by the original assembler. iCORN, that enables errors in the consensus sequence to...2554 days ago