Results for "Estimation"
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7th International Conference on Bioinformatics and Computational Biology (BICoB)
...stering, function prediction, motif discovery, functional site recognition in protein, RNA and DNA sequences. Phylogenetics: Phylogeny estimation, models of evolution, compara...3519 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...omputationally expensive, forcing researchers to use faster abundance estimation programs, which only classify...09 times faster than Megablast and 11 times faster than the abundance estimation program MetaPhlAn. Kraken is...2890 days ago
- ...ion file that notably specifies the average insert size of the mate-pair library preprocess allows the detection and correction of chimerae, the estimation of contigs copy number and pr...
2874 days ago
- ...: BLAT, BLASTALL (including bl2seq, formatdb and fastacmd), PAML (including codeml and yn00) and KaKs_Calculator (including 10 substitution rate estimation methods). gKaKs can automatic...
2827 days ago
- ...on, refer to the manual. KmerGenie can be used to determine the best k-mer size, minimum abundance of correct k-mers, and genome size estimation for your dataset.
2726 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic method that estimates the ploidy of any...how applicability of the method for variant calling and allele dosage estimation. Results for simulated and re...2648 days ago
LIBSVM -- A Library for Support Vector Machines
...M is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It supports...2489 days ago
- ...al models for ab initio and evidence-guided prediction of genes RNA-seq and transcriptomics &mdash transcript assembly, abundance estimation and differential expression t...
2370 days ago
Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for othe...2356 days ago
- ...is also possible to run TelomereHunter with one input file. TelomereHunter extracts and sorts telomeric reads from the input sample(s). For the estimation of telomere content, GC biase...
2305 days ago
