Results for "Evaluate"
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...simulated polymorphisms, and writes the true read coordinates as well as the number of polymorphisms and sequencing errors in read names. One can evaluate the accuracy of a mapper or a...2888 days ago
Maq: Mapping and Assembly with Quality
...y maq, maq.pl and maq_eval.pl to the $PATH or to the same directory. Simulate diploid reference and read sequences, map reads, call variants and evaluate the results in one go: maq.p...2736 days ago
- ...ser to the actual sequenced genome and has a full coverage. In this paper, we describe our approach and test its implementation called RECORD. We evaluate RECORD on both simulated and...
2733 days ago
QuorUM: An Error Corrector for Illumina Reads
...erving the most true k-mers, and we introduce a composite statistic π that measures how successful we are at achieving this dual goal. We evaluate the performance of QuorUM by...2385 days ago
Seal: SEquence ALignment evaluation suite
...e (implemented in Java) provides several utilities that can be used to evaluate alignment algorithms, includi...ing run times and measures of accuracy. Seal has interfaces to evaluate the following software packag...2329 days ago
Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new assemblies and perform exploratory comparative genomics...2318 days ago
merqury: Evaluate genome assemblies with k-mers
Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual. The k-mer spectrum of this read set can be used for i...1416 days ago
QuasiModo - Quasispecies Metric Determination on Omics
...eproduces the results of the HCMV benchmarking study. In this study we evaluated genome assemblers and varian...b strains in different abundance ratios. This tool can also be used to evaluate assemblies and variant callin...1059 days ago
