Results for "Exploring Gene Networks"
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This is a collection of libraries and high-quality end-user scripts for bioinformatic analysis, including working with gene annotation, collecting data s...a unified, abstracted interface to multiple common gene ann...3011 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that...es and constrained elements are obtained. Gene alignments are used to define Ensembl Protein Families, GeneTrees and homologies for both...displays, collapsible gene tree plots, a gene fam...3002 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of J...nscriptional complexity at at a given gene or locus, and then processes...t transcripts derived from paralogous genes. Briefly, the process works...cripts that corresponds to paralogous genes....2978 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is...blic sources) Checking sequence quality, trimming, general sequence manipulation Map...-Seq) Microarray Basic analysis of Affymetrix Gene Exp...2945 days ago
- AccNET is a Perl application that presents a ne...lysis platforms. AccNET collects phylogenetic and functional information...rk improving the analysis capability. Networks offer a new perspective o...rough elements acquired by horizontal gene transfers and not constricted by...
2780 days ago
- High-throughput genomics has revolutionized biological research, howev...tative assessment of genome assembly, gene set, and transcriptome comple...olutionarily informed expectations of gene content from near-universal s...mics studies, and the annotated BUSCO gene mod...
2930 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2918 days ago
- A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcome
2918 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise t...ome assembly data sets as a QC step. This repository accompanies the paper:Blobology: explorin...
2896 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)...ualize functional profiles (GO and KEGG) of gene and gene clusters.Author: Gua...ckage for comparing biological themes among gene clu...
2893 days ago
