Download the genome from NCBI using bash script/command
...l #Read the url from file and download FILES=$(pwd)/* for f in $FILES do echo "Processing $f file..." filename=$(basename "$f") extension="${filename##*.}" filename...2529 days ago
Download the gff files from NCBI using bash script/command
...#Read the uerl from file and download FILES=$(pwd)/* for f in $FILES do echo "Processing $f file..." filename=$(basename "$f") extension="${filename##*.}" filename...2520 days ago
Install Parrot Virtual Machine !
...-L --library add path to library search --hash-seed F00F specify hex value to use as hash seed -X --dynext add path to dynamic extension search -R --runcore...1534 days ago
Installing Platypus on Ubuntu !
...pus git:(master) ls Dockerfile extensions LICENSE Makefile misc REA...'cython/htslibWrapper.c' Cython extension (up-to-date) building 'htsli...tem__ instead building 'arrays' extension gcc -pthread -B /home/urbe/a...ping 'pysam/TabProxies.c' Cython extension (up-to-date) building 'TabPr...2016 days ago
Tadpole is 250x faster than SPADes assembler !
...e.sh in= out= mode=correct Extension and correction may be done si...correction or extension. reads=-1 Only pr...coremask=t All kmer extensions share the same hashcode. fi...below this are ignored. errorextensionreassemble=5 (eer) Verify this...973 days ago