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Results for "Extract Region"

Wire posts

  • Archana Malhotra

    One code to find them all is a set of perl scripts to extract useful information from RepeatMasker http://doua.prabi.fr/software/one-code-to-find-them-all

    2733 days ago

  • Shruti Paniwala

    Extract ten lines below matched string with grep: grep -A 10 "string" filename1 ; -B for above and -C for both #grep #Linux #Tricks #Lines #Matches

    2714 days ago

  • Shruti Paniwala

    Extract values : cat seeALN.xls | grep -w "scaffold_1" to #grep #exact #matching words from file seeALN.xls

    2631 days ago

  • Abhimanyu Singh

    #Extract a #sequence from #multi-fasta file: $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file

    2603 days ago

  • Abhimanyu Singh

    Show before(B) and after(A) the matching region $ grep -B 3 -A 2 foo README.txt #Linux #Tricks #View #Grep

    2552 days ago

  • Jit

    Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern

    2494 days ago

  • Rahul Nayak

    #Extract all the files from a #directory and #sub-dir with #pattern. $ find TrimmedDir -type f | grep "L_" | xargs -i cp {} .

    2222 days ago

  • Rahul Nayak

    Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed #Bed #Extract #Sequence #bedtools

    2236 days ago

  • Manisha Mishra

    Extract fasta with Ids. $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file #extract #fasta #sequence #ids

    2202 days ago

  • Rahul Agarwal

    https://scrapy.org/ #extract #data #from #websites #webscraping

    2177 days ago

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