2550 days ago
2550 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then ou...h contains good reads, bad reads and the QC results of each fastq file/pair.Currently it suppor...2358 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
...ke.smith@embl.de. If you’re not interested in the quality assement of the raw or event level data, and want to jump straight to the getting FASTQ format files from fast5 files...2348 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...from the PBcR website wget -O- http://www.cbcb.umd.edu/software/PBcR/data/selfSampleData.tar.gz | tar zxf - ln -s selfSampleData/pacbio_filtered.fastq reads.fq # Install minimap a...2344 days ago
MinION_GC: An R script to do some QC on MinION data
Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single, small, .txt...2338 days ago
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro supports the main Hi-C protoco...2335 days ago
Biological file format tutorial
...o distinguish the difference between different formats. Please refer user manual or other information resources on web for more details. FASTA FASTQ SAM BAM VCF GFF GTF...2324 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
...uld appear in fasta format with 1 entry per node, the meta information should be in the format:>NODE the set of sequences should be in fasta or fastq format. These sequences will...1975 days ago
AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...Filtering, Trimming, Error Removing and Quality Control for fastq data AfterQC can simply go through all fastq files in a folder and then ou...ch contains good reads, bad reads and the QC results of each fastq file/pair. Currently it supp...2130 days ago